Analysis of the community structure of abyssal kinetoplastids revealed similar communities at larger spatial scales

Knowledge of the spatial scales of diversity is necessary to evaluate the mechanisms driving biodiversity and biogeography in the vast but poorly understood deep sea. The community structure of kinetoplastids, an important group of microbial eukaryotes belonging to the Euglenozoa, from all abyssal plains of the South Atlantic and two areas of the eastern Mediterranean was studied using partial small subunit ribosomal DNA gene clone libraries. A total of 1364 clones from 10 different regions were retrieved. The analysis revealed statistically not distinguishable communities from both the South-East Atlantic (Angola and Guinea Basin) and the South-West Atlantic (Angola and Brazil Basin) at spatial scales of 1000–3000 km, whereas all other communities were significantly differentiated from one another. It seems likely that multiple processes operate at the same time to shape communities of deep-sea kinetoplastids. Nevertheless, constant and homogenous environmental conditions over large spatial scales at abyssal depths, together with high dispersal capabilities of microbial eukaryotes, maintain best the results of statistically indistinguishable communities at larger spatial scales.     

Defense peptides from barnyard grass (Echinochloa crusgalli L.) seeds

A number of defense polypeptides from latent seeds of weed cereal barnyard grass (Echinochloa crusgalli L.) has been isolated and characterized using an acidic extraction and high performance liquid chromatography methods in combination with MALDI-TOF mass spectrometry and Edman sequencing. Members of three antimicrobial peptide families and two protease inhibitor families were found to be localized in barnyard grass seeds. Their biological activity concerning to Gram-Positive and Gram-Negative phytopathogenic bacteria, as well as oomycete Phytophthora infestans, has been investigated. Diversity of barnyard grass defense peptides is a significant factor that provides a resistance of E. crusgalli seeds to germination and latent phases.     

GIS interpolations of witness tree records (1839–1866) for northern Wisconsin at multiple scales

To construct forest landscape of pre‐European settlement periods, we developed a GIS interpolation approach to convert witness tree records of the U.S. General Land Office (GLO) survey from point to polygon data, which better described continuously distributed vegetation. The witness tree records (1839–1866) were processed for a 3‐million ha landscape in northern Wisconsin, U.S.A. at different scales. We provided implications of processing results at each scale. Compared with traditional GLO mapping that has fixed mapping scales and generalized classifications, our approach allows presettlement forest landscapes to be analysed at the individual species level and reconstructed under various classifications. We calculated vegetation indices including relative density, dominance, and importance value for each species, and quantitatively described the possible outcomes when GLO records are analysed at three different scales (resolution). The 1 × 1‐section resolution preserved spatial information but derived the most conservative estimates of species distributions measured in percentage area, which increased at coarser resolutions. Such increases under the 2 × 2‐section resolution were in the order of three to four times for the least common species, two to three times for the medium to most common species, and one to two times for the most common or highly contagious species. We mapped the distributions of hemlock and sugar maple from the pre‐European settlement period based on their witness tree locations and reconstructed presettlement forest landscapes based on species importance values derived for all species. The results provide a unique basis to further study land cover changes occurring after European settlement.     

Improved Kinetic Resolution by Enzyme-Catalyzed Parallel Reactions

Competitive parallel reactions with opposite enantioselectivity are presented as a strategy to enhance the enantiomeric product purity in enzymatic kinetic resolution. Lipase-catalyzed simultaneous hydrolysis and amidation of racemic methy 12-chloropropionate led to significantly improved amide yield and enantiomeric excess. Process results can be controlled by changing the hydrolysis/amidation reaction rates through variation of the solvent and the initial amine concentration. This is described by a kinetic model.     

Lysine Succinylation of VBS Contributes to Sclerotia Development and Aflatoxin Biosynthesis in Aspergillus flavus

Aspergillus flavus is a common saprophytic and pathogenic fungus, and its secondary metabolic pathways are one of the most highly characterized owing to its aflatoxin (AF) metabolite affecting global economic crops and human health. Different natural environments can cause significant variations in AF synthesis. Succinylation was recently identified as one of the most critical regulatory post-translational modifications affecting metabolic pathways. It is primarily reported in human cells and bacteria with few studies on fungi. Proteomic quantification of lysine succinylation (Ksuc) exploring its potential involvement in secondary metabolism regulation (including AF production) has not been performed under natural conditions in A. flavus. In this study, a quantification method was performed based on tandem mass tag labeling and antibody-based affinity enrichment of succinylated peptides via high accuracy nano-liquid chromatography with tandem mass spectrometry to explore the succinylation mechanism affecting the pathogenicity of naturally isolated A. flavus strains with varying toxin production. Altogether, 1240 Ksuc sites in 768 proteins were identified with 1103 sites in 685 proteins quantified. Comparing succinylated protein levels between high and low AF-producing A. flavus strains, bioinformatics analysis indicated that most succinylated proteins located in the AF biosynthetic pathway were downregulated, which directly affected AF synthesis. Versicolorin B synthase is a key catalytic enzyme for heterochrome B synthesis during AF synthesis. Site-directed mutagenesis and biochemical studies revealed that versicolorin B synthase succinylation is an important regulatory mechanism affecting sclerotia development and AF biosynthesis in A. flavus. In summary, our quantitative study of the lysine succinylome in high/low AF-producing strains revealed the role of Ksuc in regulating AF biosynthesis. We revealed novel insights into the metabolism of AF biosynthesis using naturally isolated A. flavus strains and identified a rich source of metabolism-related enzymes regulated by succinylation.     

退耕还林还草工程对陕北地区生态系统服务价值时空演变的影响

基于陕北地区1990、2000、2015年土地利用数据，运用单位面积生态系统价值当量因子法、格网法、探索性空间数据法（ESDA），分析了退耕还林还草工程实施前后生态系统服务价值（ESV）的空间分布和演化规律，探讨了退耕还林还草工程对ESV的影响。结果表明：（1）陕北地区退耕还林还草工程实施效果显著，工程实施后共有297066.15 hm2耕地转化为林地和草地，林草覆盖率由57.33%增长至60.50%。（2）退耕还林还草工程使得陕北地区ESV得到了显著提升。25年间陕北地区ESV共增加了32.82亿元，ESV在工程实施后比工程实施前多增加了5.93亿元，增长主要源于退耕引起林地和草地面积的增加。（3）ESV空间分布上呈显著的“南高北低”分布格局，并表现出正向的集聚性和依存性，ESV热点区和冷点区集聚效果明显，热点区集聚与林地、草地的空间分布相吻合，冷点区集聚与未利用地、耕地和建设用地的空间分布相吻合。（4）受退耕还林还草工程影响，陕北地区中部中等等级和次高ESV分布区域逐渐增大、次热点区空间集聚性逐渐增强，北部次低等级和低等级ESV分布区域逐渐减少、冷点区空间集聚性逐渐减弱。整体而言，陕北地区土地利用类型转移和ESV的增减变化与推行退耕还林还草工程在时间上相呼应、在空间上相匹配，退耕还林还草工程实施使得陕北地区生态环境得到了有效改善，ESV得到了显著提升。     

基于MSPA-连接度-空间句法的生态保护空间及优先级识别——以苏锡常地区为例

随着城市化进程的加快,对生态保护空间(Ecological Protect Area,EPA)进行优先级识别已经成为保护生物多样性,缓解城市生态压力,提高土地利用效率的重要方法之一。以苏锡常地区为例,通过形态空间格局分析(Morphological Spatial Pattern Analysis,MSPA)确定EPA,进而采用景观连接度方法对其优先级进行识别,以优先级较高的林地和水域为"源地",构建EPA网络;同时由于景观连接度方法在识别优先级时,未能体现EPA对物种决策的非等权重影响,因此本研究引入空间句法进一步对EPA进行优先级识别。结果显示:1)苏锡常地区EPA中编号1、2的林地以及太湖的优先级最高,是区域网络的3个中心,需要优先保护;2)引入空间句法的优先级识别结果与基于景观连接度的优先级识别结果存在明显差异,后者优先级较高的8个EPA,在引入空间句法后优先级降低1—2个等级;后者优先级较低的4个EPA的优先级则上升了2个等级。同时也表明:基于连接度-空间句法的EPA优先级识别方法能够反映不同景观要素对物种决策行为的非等权重影响,强化了生态要素的空间配置的生态效应,为明确关键性生态空间,提供了有效的方法补充,对保护生物多样性和维系区域生态安全具有重要意义。     

Mate detection success of maleClethrionomys rufocanus in relation to the spatial distribution of sexually receptive females

Summary Mate detection success of male grey-sided voles,Clethrionomys rufocanus, in relation to the spatial distribution of sexually receptive females was studied in an experimental island population. The spatiotemporal distribution of receptive females was controlled by containing females in small, mobile wire-mesh cages, whereas the response by free-ranging males was monitored by means of radiotelemetry. Males were on average more successful in finding oestrous females when females were spatially clumped than when females were spatially overdispersed. In addition, the variance (CV) in male mate detecting success was highest when females had an overdispersed spatial distribution. These results are consistent with predictions from a theoretical model (Ims, 1988b) analysing the effect of mate distribution on male mating success, and with empirical results on prey detection success of predators searching for prey.